| bioplex |
BioPlex_HCT116_1.0 |
https://bioplex.hms.harvard.edu/download.php |
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome |
cell line |
|
|
11,044 |
| lf |
PXD005141 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD005141 |
Loss-less Nano-fractionator for High Sensitivity, High Coverage Proteomics |
cell line |
|
cervical cancer |
284 |
| lf |
PXD018117 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD018117 |
A SARS-CoV-2 protein interaction map reveals targets for drug repurposing |
cell line |
|
SARS-CoV-2 |
98 |
| lf |
PXD001468 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD001468 |
A mass-tolerant database search identifies a large proportion of unassigned spectra in shotgun proteomics as modified peptides |
cell line |
|
health |
24 |
| tmt |
PXD045710 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD045417 |
Proteogenomic analysis of enriched HGSOC tumor epithelium identifies prognostic signatures and therapeutic vulnerabilities |
|
|
|
324 |
| tmt |
PXD013276 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD013276 |
PTEN and DNA-PK determine sensitivity and recovery in response to WEE1 inhibition in human breast cancer |
cell line |
|
breast cancer |
438 |
| lf |
PXD018305 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD018305 |
Proteogenomics Reveals Perturbed Signaling Networks in Malignant Melanoma Cells Resistant to BRAF Inhibition |
cell line |
|
melanoma |
51 |
| bioplex |
BioPlex_293T_3.0 |
https://bioplex.hms.harvard.edu/download.php |
Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome |
cell line |
|
|
20,246 |
| tmt |
PDC000315 |
https://proteomic.datacommons.cancer.gov/pdc/study/PDC000315 |
The AML Microenvironment Catalyzes a Step-wise Evolution to Gilteritinib Resistance |
cell line |
|
acute myeloid leukemia |
48 |
| lf02 |
PXD042233 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD042233 |
Mass spectrometry-based proteomics data from thousands of HeLa control samples |
cell line |
|
cervical cancer |
7,375 |
| lf |
PXD013615 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD013615 |
Proteome activity landscapes of tumor cell lines determine drug responses |
cell line |
|
breast cancer, lung cancer, colorectal cancer, leukemia, melanoma, lung cancer, ovary cancer, prostate cancer, kidney cancer |
1,799 |
| tmt |
PXD020221 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD020221 |
Quantitative mapping of transcriptome and proteome dynamics during polarization of human iPSC-derived neurons |
cell line |
|
|
32 |
| tmt |
PXD026892 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD026892 |
A proteomic and phosphoproteomic landscape of KRAS mutant cancers identifies combination therapies |
cell line |
|
pacreatic cancer, lung cancer, colorectal cancer, breast cancer, stomach cancer, cervical cancer, and bladder cance |
256 |
| lf |
PXD020187 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD020187 |
Insights into Biomechanical and Proteomic Characteristics of Small Diameter Vascular Grafts Utilizing the Human Umbilical Artery |
patient |
|
|
10 |
| tmt |
PDC000356 |
https://proteomic.datacommons.cancer.gov/pdc/study/PDC000356 |
Refining Classification of Cholangiocarcinoma Subtypes via Proteogenomic Integration Reveals New Therapeutic Prospects |
patient |
bile duct |
Cholangiocarcinoma |
475 |
| tmt |
MSV000089012 |
ftp://massive.ucsd.edu/v01/MSV000089012 |
Proteomic and phosphoproteomic landscapes of acute myeloid leukemia |
patient |
blood |
acute myeloid leukemia |
150 |
| tmt |
CPTAC3_AML_Joshi |
|
The AML microenvironment catalyzes a stepwise evolution to gilteritinib resistance |
patient |
blood |
acute myeloid leukemia |
108 |
| tmt |
PTRC_AML |
https://proteomic.datacommons.cancer.gov/pdc/study/PDC000477 |
Mapping the proteogenomic landscape enables prediction of drug response in acute myeloid leukemia |
patient |
blood |
acute myeloid leukemia |
504 |
| tmt16 |
PXD034789 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD034789 |
Deep Proteomics Network and Machine Learning Analysis of Human Cerebrospinal Fluid in Japanese Encephalitis Virus Infection |
patient |
blood |
acute myeloid leukemia |
439 |
| lf |
PXD035249 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD035249 |
Four-dimensional proteomics analysis of human cerebrospinal fluid with trapped ion mobility spectrometry using PASEF |
patient |
blood |
acute myeloid leukemia |
24 |
| tmt |
PDC000433 |
https://proteomic.datacommons.cancer.gov/pdc/study/PDC000433 |
Proteomics, Post-translational Modifications, and Integrative Analyses Reveal Molecular Heterogeneity within Medulloblastoma Subgroups |
patient |
brain |
brain cancer |
125 |
| lf |
PXD015079 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD015079 |
Hemispheric asymmetry in the human brain and in Parkinson's disease is linked to divergent epigenetic patterns in neurons |
patient |
brain |
Parkinson's disease |
12 |
| tmt |
PDC000514 |
https://proteomic.datacommons.cancer.gov/pdc/study/PDC000514 |
Integrated proteogenomic characterization of glioblastoma evolution |
patient |
brain |
brain cancer |
624 |
| lf |
PXD000547 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD000547 |
Deciphering the human brain proteome: characterization of the anterior temporal lobe and corpus callosum as part of the Chromosome 15-centric Human Proteome Project |
health tissue |
brain |
health |
40 |
| lf |
PXD006233 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD006233 |
Brain ureido degenerative protein modifications are associated with neuroinflammation and proteinopathy in Alzheimer's disease with cerebrovascular disease |
patient |
brain |
Alzheimer's disease |
377 |
| lf |
PXD024427 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD024427 |
Proteomics separates adult-type diffuse high-grade gliomas in metabolic subgroups independent of 1p/19q codeletion and across IDH mutational status |
patient |
brain |
brain cancer |
92 |
| tmt |
CPTAC3_GBM |
https://proteomic.datacommons.cancer.gov/pdc/study/PDC000204 |
Proteogenomic and metabolomic characterization of human glioblastoma |
patient |
brain |
brain cancer |
264 |
| tmt |
CPTAC2_BCA |
https://proteomic.datacommons.cancer.gov/pdc/study/PDC000120 |
Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy |
patient |
breast |
breast cancer |
425 |
| tmt |
PDC000408 |
https://proteomic.datacommons.cancer.gov/pdc/study/PDC000408 |
Proteogenomic markers of chemotherapy resistance and response in triple negative breast cancer |
patient |
breast |
breast cancer |
144 |
| lf |
PXD001325 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD001325 |
Proteome profiling of breast cancer biopsies reveals a wound healing signature of cancer-associated fibroblasts |
patient |
breast |
breast cancer |
48 |
| lf |
PXD008222 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD008222 |
The Proteomic Landscape of Triple-Negative Breast Cancer |
patient |
breast |
breast cancer |
456 |
| tmt |
PXD011385 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD011385 |
Breast cancer quantitative proteome and proteogenomic landscape |
patient |
breast |
breast cancer |
144 |
| tmt |
PXD008841 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD008841 |
Breast cancer quantitative proteome and proteogenomic landscape |
patient |
breast |
breast cancer |
722 |
| tmt |
syn25795030 |
https://www.synapse.org/ |
Mis-spliced transcripts generate de novo proteins in TDP-43–related ALS/FTD |
patient |
cerebrospinal fluid |
smyotrophic lateral sclerosis |
72 |
| lf |
syn26642919 |
https://www.synapse.org/ |
Mis-spliced transcripts generate de novo proteins in TDP-43–related ALS/FTD |
patient |
cerebrospinal fluid |
smyotrophic lateral sclerosis |
96 |
| lf |
CPTAC2_COAD_LFQ |
https://proteomic.datacommons.cancer.gov/pdc/study/PDC000109 |
Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities |
patient |
colon |
colon cancer |
600 |
| tmt |
CPTAC2_COAD |
https://proteomic.datacommons.cancer.gov/pdc/study/PDC000116 |
Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities |
patient |
colon |
colon cancer |
264 |
| lf |
PXD001608 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD001608 |
Neutrophil Extracellular Traps in Ulcerative Colitis: A Proteome Analysis of Intestinal Biopsies |
patient |
colon |
Ulcerative colitis |
60 |
| tmt |
CPTAC3_HNSCC |
https://proteomic.datacommons.cancer.gov/pdc/study/PDC000221 |
Proteogenomic insights into the biology and treatment of HPV-negative head and neck squamous cell carcinoma |
patient |
head and neck |
head and neck cancer |
500 |
| lf |
PXD008934 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD008934 |
Suppression of detyrosinated microtubules improves cardiomyocyte function in human heart failure |
patient |
heart |
heart failure |
34 |
| lf |
PXD006675 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD006675 |
Region and cell-type resolved quantitative proteomic map of the human heart |
health tissue |
heart |
health |
610 |
| tmt |
CPTAC3_CCRCC |
https://proteomic.datacommons.cancer.gov/pdc/study/PDC000127 |
Integrated Proteogenomic Characterization of Clear Cell Renal Cell Carcinoma |
patient |
kidney |
kidney cancer |
575 |
| tmt |
CPTAC3_nCCRCC |
|
|
patient |
kidney |
kidney cancer |
175 |
| tmt |
CPTAC2_HCC |
https://proteomic.datacommons.cancer.gov/pdc/study/PDC000198 |
Integrated Proteogenomic Characterization of HBV-Related Hepatocellular Carcinoma |
patient |
liver |
hepatocellular carcinoma |
1,584 |
| lf |
IPX0003921002 |
https://www.iprox.cn/page/subproject.html?id=IPX0003921002 |
Evolutionary proteogenomic landscape from pre-invasive to invasive lung adenocarcinoma |
patient |
lung |
lung cancer |
768 |
| tmt |
CPTAC3_LSCC |
https://proteomic.datacommons.cancer.gov/pdc/study/PDC000234 |
A Proteogenomic Portrait of Lung Squamous Cell Carcinoma |
patient |
lung |
lung cancer |
549 |
| tmt |
PDC000219 |
https://proteomic.datacommons.cancer.gov/pdc/study/PDC000219 |
Proteogenomics of Non-smoking Lung Cancer in East Asia Delineates Molecular Signatures of Pathogenesis and Progression |
patient |
lung |
lung cancer |
1,287 |
| tmt |
CPTAC3_LUAD |
https://proteomic.datacommons.cancer.gov/pdc/study/PDC000153 |
Proteogenomic Characterization Reveals Therapeutic Vulnerabilities in Lung Adenocarcinoma |
patient |
lung |
lung cancer |
625 |
| lf |
PXD002612 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD002612 |
Proteomic profiling of lung adenocarcinoma indicates heightened DNA repair, antioxidant mechanisms and identifies LASP1 as a potential negative predictor of survival |
patient |
lung |
lung cancer |
234 |
| tmt |
PDC000434 |
https://proteomic.datacommons.cancer.gov/pdc/study/PDC000434 |
Proteogenomic analysis of lung adenocarcinoma reveals tumor heterogeneity, survival determinants, and therapeutically relevant pathways |
patient |
lung |
lung cancer |
360 |
| lf |
PXD005819 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD005819 |
Proteomic Analysis of the Human Anterior Pituitary Gland |
health tissue |
multiple |
health |
33 |
| lf |
PXD015087 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD015087 |
Robust, reproducible and quantitative analysis of thousands of proteomes by micro-flow LC-MS/MS |
health fluid |
multiple |
health |
138 |
| tmt16 |
PXD030034 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD030034 |
Multiomic analysis of homologous recombination-deficient end-stage high-grade serous ovarian cancer |
cell line |
multiple |
Pacreatic cancer, lung cancer, colorectal cancer, breast cancer, stomach cancer, cervical cancer, bladder cancer |
504 |
| lf |
PXD010271 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD010271 |
Individual Variability of Protein Expression in Human Tissues |
health tissue |
multiple |
health |
252 |
| lf |
PXD000561 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD000561 |
A draft map of the human proteome |
health tissue |
multiple |
health |
2,205 |
| lf |
PXD004452 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD004452 |
An Optimized Shotgun Strategy for the Rapid Generation of Comprehensive Human Proteomes |
cell line, health tissue |
multiple |
multiple cancers |
1,019 |
| lf |
PXD004143 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD004143 |
Integrating Next-Generation Genomic Sequencing and Mass Spectrometry To Estimate Allele-Specific Protein Abundance in Human Brain |
health tissue |
multiple |
health |
4 |
| lf |
PXD002029 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD002029 |
Proteome stability analysis of snap frozen, RNAlater preserved, and formalin-fixed paraffin-embedded human colon mucosal biopsies |
health tissue |
multiple |
health |
24 |
| lf |
PXD010154 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD010154 |
A deep proteome and transcriptome abundance atlas of 29 healthy human tissues |
health tissue |
multiple |
health |
1,547 |
| tmt |
CPTAC2_OV_PNNL |
https://proteomic.datacommons.cancer.gov/pdc/study/PDC000118 |
Proteogenomic Characterization of Ovarian HGSC Implicates Mitotic Kinases, Replication Stress in Observed Chromosomal Instability |
patient |
ovary |
ovarian cancer |
288 |
| tmt |
PDC000362 |
https://proteomic.datacommons.cancer.gov/pdc/study/PDC000362 |
Proteogenomic analysis of chemo-refractory high-grade serous ovarian cancer |
patient |
ovary |
ovarian cancer |
192 |
| tmt |
CPTAC2_OV_JHU |
https://proteomic.datacommons.cancer.gov/pdc/study/PDC000110 |
Integrated Proteomic and Glycoproteomic Characterization of Human High-Grade Serous Ovarian Carcinoma |
patient |
ovary |
ovarian cancer |
312 |
| tmt |
PDC000360 |
https://proteomic.datacommons.cancer.gov/pdc/study/PDC000360 |
Proteogenomic analysis of chemo-refractory high-grade serous ovarian cancer |
patient |
ovary |
ovarian cancer |
504 |
| tmt |
PXD045417 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD045417 |
Proteogenomic analysis of enriched HGSOC tumor epithelium identifies prognostic signatures and therapeutic vulnerabilities |
patient |
ovary |
ovary cancer |
1,007 |
| tmt |
PDC000358 |
https://proteomic.datacommons.cancer.gov/pdc/study/PDC000358 |
Proteogenomic analysis of chemo-refractory high-grade serous ovarian cancer |
patient |
ovary |
ovarian cancer |
48 |
| tmt |
PXD009131 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD009131 |
Comprehensive Proteomics Analysis of Stressed Human Islets Identifies GDF15 as a Target for Type 1 Diabetes Intervention |
Patient |
pancrea |
type 1 diabetes |
48 |
| tmt |
CPTAC3_PDAC |
https://proteomic.datacommons.cancer.gov/pdc/study/PDC000270 |
Proteogenomic characterization of pancreatic ductal adenocarcinoma |
patient |
pancrea |
pacreatic cancer |
625 |
| tmt |
PDC000248 |
https://proteomic.datacommons.cancer.gov/pdc/study/PDC000248 |
Proteogenomic landscape of human pancreatic ductal adenocarcinoma in an Asian population reveals tumor cell-enriched and immune-rich subtypes |
patient |
pancrea |
pacreatic cancer |
407 |
| lf |
MSV000081552 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=MSV000081552 |
The Proteogenomic Landscape of Curable Prostate Cancer |
patient |
prostate |
prostate cancer |
150 |
| lf |
PXD009630 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD009630 |
Improved survival prognostication of node-positive malignant melanoma patients utilizing shotgun proteomics guided by histopathological characterization and genomic data |
Patient |
skin |
skin cancer |
111 |
| lf |
PXD001724 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD001724 |
A protein deep sequencing evaluation of metastatic melanoma tissues |
patient |
skin |
skin cancer |
65 |
| lf |
PXD026086 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD026086 |
The human melanoma proteome atlas—Defining the molecular pathology |
patient |
skin |
skin cancer |
185 |
| lf |
IPX0006050000 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD047297 |
Proteomic characterization identifies clinically relevant subgroups of soft tissue sarcoma |
patient |
soft tissue |
soft tissue cancer |
357 |
| lf |
IPX0002116000 |
https://proteomecentral.proteomexchange.org/cgi/GetDataset?ID=PXD024255 |
Proteomic characterization of gastric cancer response to chemotherapy and targeted therapy reveals potential therapeutic strategies |
patient |
stomach |
stomach cancer |
288 |
| tmt |
CPTAC3_UCEC |
https://proteomic.datacommons.cancer.gov/pdc/study/PDC000125 |
Proteogenomic Characterization of Endometrial Carcinoma |
patient |
uterus |
endometrial carcinoma |
408 |
| tmt |
CPTAC3_C_UCEC |
https://proteomic.datacommons.cancer.gov/pdc/study/PDC000439 |
Proteogenomic insights suggest druggable pathways in endometrial carcinoma |
patient |
uterus |
endometrial carcinoma |
384 |
